SNP Profiles matching LV 20 [POU]

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 Key

 1234567891011121314
_Input profile
TTCCCCGTCTGGACCCAACCGGAGAACC
1._LV_20_[POU]
__CCGTCT_ACCCAACC__AA_
2._LV_20_[POU]
__CCGTCT_ACCCAACC__AA_
3._LV_20_[POU]
__CCGTCT_ACCCAACC__AA_
4._LV_20_[POU]
__CCGTCT_ACCCAACC__AA_
5._RUQ_354
__CCGTCT_ACCCAACC__AA_
6._LV_20_[POU]
__CCGTCT_ACCCAACC__AA_
7._LV_20_[POU]
__CCGTCT_ACCCAACC__AA_
8._GC-04-027-2-09
TTCCCCGTCTGGACCCAACCGGAGAACC
9._GC-04-027-2-09
TTCCCCGTCTGGACCCAACCGGAGAACC
10._GC-04-027-2-09
TTCCCCGTCTGGACCCAACCGGAGAACC
11._GC-04-027-2-09
TTCCCCGTCTGGACCCAACCGGAGAACC
12._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
13._RUQ_1539
TTCCCCGTCTGGACCCAACCAGAGATCC
14._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
15._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
16._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
17._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
18._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
19._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
20._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
21._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
22._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
23._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
24._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
25._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
26._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
27._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
28._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
29._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
30._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
31._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
32._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
33._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
34._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
35._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
36._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
37._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
38._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
39._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
40._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
41._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
42._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
43._RUQ_414
__CCGTCT_ACCCAACC__AT_
44._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
45._EET_95_[ECU]
__CCGTCT_ACCC_CC__AT_
46._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
47._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
48._EET_95_[ECU]
__CCGTCT_ACCCAACC__AT_
49._EET_95_[ECU]
__CCGTCT_AC_AACC__AT_
50._RUQ_462
TTCCCC-CTGGACCCAACCGGAGATCC
 1516171819202122232425262728
_Input profile
AGCCTTGTCGCCCTTTCCGTAGTTACGG
1._LV_20_[POU]
AGCCTTGTCGCC_TT_GT___GG
2._LV_20_[POU]
AGCCTTGTCGCC_TT_GT___GG
3._LV_20_[POU]
AGCCTTGTCGCC_TT_GT___GG
4._LV_20_[POU]
AGCCTTGTCGCC_TT_GT___GG
5._RUQ_354
AGCCTTGTCGCC_TT_GT___GG
6._LV_20_[POU]
AGCCTTGTCGCC_TT_GT___GG
7._LV_20_[POU]
AGCCTTGTCGCC_TT_GT___GG
8._GC-04-027-2-09
AGCCTTGTCGCCCTTTCTGTAGTTACGG
9._GC-04-027-2-09
AGCCTTGTCGCCCTTTCTGTAGTTACGG
10._GC-04-027-2-09
AGCCTTGTCGCCCTTTCTGTAGTTACGG
11._GC-04-027-2-09
AGCCTTGTCGCCCTTTCTGTAGTTACGG
12._EET_95_[ECU]
AGAC_GTCGCC_TT_GT___GG
13._RUQ_1539
AGACCTGTCGCCCTTTCTGTAGTTACGG
14._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
15._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
16._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
17._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
18._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
19._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
20._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
21._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
22._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
23._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
24._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
25._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
26._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
27._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
28._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
29._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
30._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
31._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
32._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
33._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
34._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
35._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
36._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
37._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
38._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
39._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
40._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
41._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
42._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
43._RUQ_414
AGACCTGTCGCC_TT_GT___GG
44._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
45._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
46._EET_95_[ECU]
_ACCTGTCGCC_TT_GT___GG
47._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
48._EET_95_[ECU]
AGACCTGTCGCC_TT_GT____
49._EET_95_[ECU]
AGACCTGTCGCC_TT_GT___GG
50._RUQ_462
AAACCTGTCGCCTTTTCCTTAGTTACGG
 2930313233343536373839404142
_Input profile
CGTTAGTTCCGGAGTTGTTTCTCTCGAG
1._LV_20_[POU]
_CTAG_CC___GT__CTCGAG
2._LV_20_[POU]
_CTAG_CC___GT__CTCGAG
3._LV_20_[POU]
_CTAG_CC___GT__CTCGAG
4._LV_20_[POU]
_CTAG_CC___GT__CTCGAG
5._RUQ_354
_CTAG_CC___GT__CTCGAG
6._LV_20_[POU]
_CTAG_CC___GT__CTCGAG
7._LV_20_[POU]
_CTAG_CC___GT__CTCGAG
8._GC-04-027-2-09
CGCTAGTTCCGGAGTTGTTTCTCTCGAG
9._GC-04-027-2-09
CGCTAGTTCCGGAGTTGTTTCTCTCGAG
10._GC-04-027-2-09
CGCTAGTTCCGGAGTTGTTTCTCTCGAG
11._GC-04-027-2-09
CGCTAGTTCCGGAGTTGTTTCTCTCGAG
12._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
13._RUQ_1539
CGTTAG-CCGGAGTTGTCTCTCTCGAG
14._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
15._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
16._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
17._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
18._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
19._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
20._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
21._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
22._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
23._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
24._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
25._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
26._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
27._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
28._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
29._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
30._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
31._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
32._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
33._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
34._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
35._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
36._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
37._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
38._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
39._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
40._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
41._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
42._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
43._RUQ_414
_CTAG_CC___GT__CTCGAG
44._EET_95_[ECU]
_CTAG_CC______CTCGAG
45._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
46._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
47._EET_95_[ECU]
_CTAG_CC___GT__CT_AG
48._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
49._EET_95_[ECU]
_CTAG_CC___GT__CTCGAG
50._RUQ_462
CGTTAGTTCCGGAGTTGTTTCTCCCGAA

Input profile: LV_20_[POU] RUQ_354

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._LV_20_[POU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4209 8 > FP
 Dapeng Zhang, 2016

2._LV_20_[POU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4209 4 > FP
 Dapeng Zhang, 2016

3._LV_20_[POU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4209 3
 Dapeng Zhang, 2016

4._LV_20_[POU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4209 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

5._LV_20_[POU] RUQ_354

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._LV_20_[POU]

97.9 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 562
 Dapeng Zhang, 2016

7._LV_20_[POU]

97.9 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 563
 Dapeng Zhang, 2016

8._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

11._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

12._EET_95_[ECU]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 16
 Dapeng Zhang, 2016

13._JA_5_/5_[POU] RUQ_1539

92.7 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 10
 Dapeng Zhang, 2016

15._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 9
 Dapeng Zhang, 2016

16._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 7
 Dapeng Zhang, 2016

17._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 6
 Dapeng Zhang, 2016

18._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 5
 Dapeng Zhang, 2016

19._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 4
 Dapeng Zhang, 2016

20._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 3
 Dapeng Zhang, 2016

21._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 2
 Dapeng Zhang, 2016

22._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 1
 Dapeng Zhang, 2016

23._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 17
 Dapeng Zhang, 2016

24._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 14
 Dapeng Zhang, 2016

25._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 13
 Dapeng Zhang, 2016

26._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 11
 Dapeng Zhang, 2016

27._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 10
 Dapeng Zhang, 2016

28._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 9
 Dapeng Zhang, 2016

29._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 8
 Dapeng Zhang, 2016

30._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 7
 Dapeng Zhang, 2016

31._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 6
 Dapeng Zhang, 2016

32._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 12 > F
 Dapeng Zhang, 2016

33._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 11 > F
 Dapeng Zhang, 2016

34._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 1 > FP
 Dapeng Zhang, 2016

35._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 16
 Dapeng Zhang, 2016

36._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 15
 Dapeng Zhang, 2016

37._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 14
 Dapeng Zhang, 2016

38._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 9
 Dapeng Zhang, 2016

39._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 8
 Dapeng Zhang, 2016

40._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 7
 Dapeng Zhang, 2016

41._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 6
 Dapeng Zhang, 2016

42._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 3
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

43._EET_95_[ECU] RUQ_414

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

44._EET_95_[ECU]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 8
 Dapeng Zhang, 2016

45._EET_95_[ECU]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 15
 Dapeng Zhang, 2016

46._EET_95_[ECU]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 12
 Dapeng Zhang, 2016

47._EET_95_[ECU]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 2
 Dapeng Zhang, 2016

48._EET_95_[ECU]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 5
 Dapeng Zhang, 2016

49._EET_95_[ECU]

91.3 %
23 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria EET 95 CATIE
 Dapeng Zhang, 2016

50._LV_28_[POU] RUQ_462

90.2 %
41 shared markers

 View  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484